No, the auto update doesn't replaces any manually added Root CA Certificates.
With the Downloadable CA List feature available in SGOS 6.3 and above, the ProxySG appliance automatically downloads an updated browser-trusted list of CAs every seven days by default. This smart download compares the existing browser-trusted list on the appliance to the new list and only modifies CA certificates that have been added or deleted since the last update. Any manual changes that were made to the file are preserved.
Imported Document ID: 000016691
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